This is the count sub command from MAGeCK. This subcommand collects sgRNA read count information from fastq files or raw count files. The output count table can be used directly in the MAGeCK Test or the MAGeCK MLE workflow.
sgRNA ID | Sequence | Gene |
---|---|---|
s_10007 | TGTTCACAGTATAGTTTGCC | CCNA1 |
s_10008 | TTCTCCCTAATTGCTTGCTG | CCNA1 |
s_10027 | ACATGTTGCTTCCCCTTGCA | CCNC |
sgRNA | Gene | HL60.initial | KBM7.initial | HL60.final | KBM7.final |
---|---|---|---|---|---|
A1CF_m52595977 | A1CF | 213 | 274 | 883 | 175 |
A1CF_m52596017 | A1CF | 294 | 412 | 1554 | 1891 |
A1CF_m52596056 | A1CF | 421 | 368 | 566 | 759 |
A1CF_m52603842 | A1CF | 274 | 243 | 314 | 855 |
A1CF_m52603847 | A1CF | 0 | 50 | 145 | 266 |