This is the test sub command from MAGeCK. This subcommand tests and ranks sgRNAs and genes based on the read count tables provided using Robust Rank Aggregation (RRA). This subcommand takes the count summary file (*.count.txt) output from MAGeCk Count and its outputs can be passed into MAGeCk Pathway for gene pathway analysis and to MAGeCK Plot to generate graphics for selected genes.
sgRNA | Gene | HL60.initial | KBM7.initial | HL60.final | KBM7.final |
---|---|---|---|---|---|
A1CF_m52595977 | A1CF | 213 | 274 | 883 | 175 |
A1CF_m52596017 | A1CF | 294 | 412 | 1554 | 1891 |
A1CF_m52596056 | A1CF | 421 | 368 | 566 | 759 |
A1CF_m52603842 | A1CF | 274 | 243 | 314 | 855 |
A1CF_m52603847 | A1CF | 0 | 50 | 145 | 266 |