| Id | Reference Name | Fasta URL | Index URL | Supplementary Tracks |
|---|---|---|---|---|
| chm13v2.0 | Human (T2T CHM13-v2.0) | chm13v2.0.fa | chm13v2.0.fa.fai | CAT/Liftoff Genes, Augustus, Genes |
| chm13v1.1 | Human (T2T CHM13-v1.1) | GCA_009914755.3_CHM13_T2T_v1.1_genomic.fna | GCA_009914755.3_CHM13_T2T_v1.1_genomic.fna.fai | Annotations, Genes |
| hg38 | Human (GRCh38/hg38) | hg38.fa | hg38.fa.fai | Refseq Genes |
| hg38_1kg | Human (hg38 1kg/GATK) | GRCh38_full_analysis_set_plus_decoy_hla.fa | GRCh38_full_analysis_set_plus_decoy_hla.fa.fai | Refseq Genes |
| hg19 | Human (GRCh37/hg19) | hg19.fasta | hg19.fasta.fai | Refseq Genes |
| hg18 | Human (hg18) | hg18.fasta | hg18.fasta.fai | Refseq Genes |
| mm39 | Mouse (GRCm39/mm39) | mm39.fa | mm39.fa.fai | Refseq Genes |
| mm10 | Mouse (GRCm38/mm10) | mm10.fa | mm10.fa.fai | Refseq Genes |
| mm9 | Mouse (NCBI37/mm9) | mm9.fasta | mm9.fasta.fai | Refseq Genes, Genes |
| rn7 | Rat (rn7) | rn7.fa | rn7.fa.fai | Genes, Genes |
| rn6 | Rat (RGCS 6.0/rn6) | rn6.fa | rn6.fa.fai | Refseq Genes, Genes |
| gorGor6 | Gorilla (Kamilah_GGO_v0/gorGor6) | gorGor6.fa | gorGor6.fa.fai | Refseq Genes, Genes |
| gorGor4 | Gorilla (gorGor4.1/gorGor4) | gorGor4.fa | gorGor4.fa.fai | Refseq Genes |
| panTro6 | Chimp (panTro6) (panTro6) | panTro6.fa | panTro6.fa.fai | Refseq Genes, Genes |
| panTro5 | Chimp (panTro5) (panTro5) | panTro5.fa | panTro5.fa.fai | Refseq Genes, Genes |
| panTro4 | Chimp (SAC 2.1.4/panTro4) | panTro4.fa | panTro4.fa.fai | Refseq Genes, Genes |
| macFas5 | Macaca fascicularis (macFas5) | macFas5.fa | macFas5.fa.fai | Genes, Genes |
| GCA_011100615.1 | Macaca fascicularis 6.0 (GCA_011100615.1) | Macaca_fascicularis.Macaca_fascicularis_6.0.dna.toplevel.fa.gz | Macaca_fascicularis.Macaca_fascicularis_6.0.dna.toplevel.fa.gz.fai | Annotations, Genes |
| panPan2 | Bonobo (MPI-EVA panpan1.1/panPan2) | panPan2.fa | panPan2.fa.fai | Refseq Genes, Genes |
| canFam3 | Dog (Broad CanFam3.1/canFam3) | canFam3.fa | canFam3.fa.fai | Refseq Genes, Genes |
| canFam4 | Dog (UU_Cfam_GSD_1.0/canFam4) | canFam4.fa | canFam4.fa.fai | Genes |
| canFam5 | Dog (canFam5) | canFam5.fa | canFam5.fa.fai | Genes, Genes |
| bosTau9 | Cow (ARS-UCD1.2/bosTau9) | bosTau9.fa | bosTau9.fa.fai | Refseq Genes, Genes |
| bosTau8 | Cow (UMD_3.1.1/bosTau8) | bosTau8.fa | bosTau8.fa.fai | Refseq Genes, Genes |
| susScr11 | Pig (SGSC Sscrofa11.1/susScr11) | susScr11.fa | susScr11.fa.fai | Refseq Genes, Genes |
| galGal6 | Chicken (galGal6) | galGal6.fa | galGal6.fa.fai | NCBI Refseq Genes |
| GCF_016699485.2 | Gallus gallus (GCF_016699485.2) | GCF_016699485.2.fa | GCF_016699485.2.fa.fai | Genes, RefSeq Transcripts |
| danRer11 | Zebrafish (GRCZ11/danRer11) | danRer11.fa | danRer11.fa.fai | Refseq Genes, Genes |
| danRer10 | Zebrafish (GRCZ10/danRer10) | danRer10.fa | danRer10.fa.fai | Refseq Genes, Genes |
| ce11 | C. elegans (ce11) | ce11.fa | ce11.fa.fai | Refseq Genes |
| dm6 | D. melanogaster (dm6) | dm6.fa | dm6.fa.fai | Refseq Genes |
| dm3 | D. melanogaster (dm3) | dm3.fa | dm3.fa.fai | UCSC Refseq Genes |
| dmel_r5.9 | D. melanogaster (dmel_r5.9) | dmel-all-chromosome-r5.9.fasta | dmel-all-chromosome-r5.9.fasta.fai | Transcripts |
| sacCer3 | S. cerevisiae (sacCer3) | sacCer3.fa | sacCer3.fa.fai | Refseq Genes |
| ASM294v2 | S. pombe (ASM294v2) | Schizosaccharomyces_pombe_all_chromosomes.fa | Schizosaccharomyces_pombe_all_chromosomes.fa.fai | Pombase forward strand, Pombase reverse strand |
| ASM985889v3 | Sars-CoV-2 (ASM985889v3) | GCF_009858895.2_ASM985889v3_genomic.fna | GCF_009858895.2_ASM985889v3_genomic.fna.fai | Annotations |
| tair10 | A. thaliana (TAIR 10) | TAIR10_chr_all.fas | TAIR10_chr_all.fas.fai | Genes |
| GCA_003086295.2 | Peanut (GCA_003086295.2) | GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3_genomic.fna | GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3_genomic.fna.fai | Annotations |
| GCF_001433935.1 | O. sativa IRGSP-1.0 (GCF_001433935.1) | GCF_001433935.1_IRGSP-1.0_genomic.fna.gz | GCF_001433935.1_IRGSP-1.0_genomic.fna.gz.fai | MSU V7 genes |
| NC_016856.1 | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | NC_016856.1.fna | NC_016856.1.fna.fai | NC_016856.1.gff.gz |
| GCA_000182895.1 | Coprinopsis cinerea okayama7#130 (GCA_000182895.1) | GCA_000182895.1.fa | GCA_000182895.1.fa.fai | Gene models |
