Visualizations
FastQC
Visualizations
FastQC
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
Quick Start
- Go to the Data Page
- Upload any sequence data (.fastq, .fasta, or .fastq.gz)
- Wait a moment - FastQC will run automatically on that file :)
- Double click the file to open FastQC
Inputs
Any .fastq or .fastq.gz fileˇ
Outputs
You’ll see an interactive .html report that looks like this
