> ## Documentation Index
> Fetch the complete documentation index at: https://wiki.latch.bio/llms.txt
> Use this file to discover all available pages before exploring further.

# Use Cases

Latch Plots enable scientific teams to get faster and more reproducible results (e.g., standard curves, normalized fluorescence, cell gating) while freeing your bench team’s time from manual qPCR, plate readers, ELISA, and flow cytometry analyses.

Explore the various ways scientists have leveraged Plots for their use cases.

## Downstream of NGS Processing

<CardGroup cols={2}>
  <Card title="ATAC-seq" href="">
    <img src="https://mintcdn.com/latchbio/AQfMXqpyiLJx3G2h/images/ATAC-Seq/Plots/Peaks.png?fit=max&auto=format&n=AQfMXqpyiLJx3G2h&q=85&s=fd87f7b166ea69aac9521a8423010330" width="2072" height="1122" data-path="images/ATAC-Seq/Plots/Peaks.png" />

    Compare peaks that represent chromatin accessibility across various samples and treatment conditions
  </Card>

  <Card title="Differential Gene Expression">
    <img src="https://mintcdn.com/latchbio/rBOhi8AJn1gA0vrv/images/bulk-rna-seq-quant/heatmap.png?fit=max&auto=format&n=rBOhi8AJn1gA0vrv&q=85&s=95cd0047f0501df58a33c3adbe6aeddc" width="1526" height="738" data-path="images/bulk-rna-seq-quant/heatmap.png" />

    View MA plots, heatmaps, and volcano plots to identify transcriptionally distinct features between biological samples.
  </Card>

  <Card title="Single-cell RNA-seq" href="">
    <img src="https://mintcdn.com/latchbio/MyGUG0Q2iaPqX-v6/images/scrnaseq/umap.png?fit=max&auto=format&n=MyGUG0Q2iaPqX-v6&q=85&s=1419027a75626b03aac1c530ed056669" width="1170" height="640" data-path="images/scrnaseq/umap.png" />

    Leverage GPU-enabled visualization dashboard with NVIDIA RAPIDs for fast data pre-processing, clustering, manual and automatic cell type annotation.
  </Card>

  <Card title="Spatial Transcriptomics" href="">
    <img src="https://mintcdn.com/latchbio/H6zlCTun8E59mJDX/images/spatial/spatial.png?fit=max&auto=format&n=H6zlCTun8E59mJDX&q=85&s=624530b15cdd0874e701f94ee20a99bf" width="1373" height="640" data-path="images/spatial/spatial.png" />

    Overlay single-cell gene expression and cell type annotation data over spatial maps generated from Visium HD
  </Card>
</CardGroup>

## Biochemical Assays

<CardGroup cols={2}>
  <Card title="qPCR" href="">
    <img src="https://mintcdn.com/latchbio/nFvCRsD3GeYvKtOX/images/plots/qpcr/bar_scatter.png?fit=max&auto=format&n=nFvCRsD3GeYvKtOX&q=85&s=a7e75cd3eb4f2093a73b7623d5b60248" width="1574" height="806" data-path="images/plots/qpcr/bar_scatter.png" />

    Calculate ∆∆Cqs with a button click, without spreadsheet formulas. Easily modify the aesthetics of generated Plots for publication.
  </Card>

  <Card title="LC-MS" href="">
    <img src="https://mintcdn.com/latchbio/OY3WpKhZ3Sm_DsN1/images/lcms/lcms.png?fit=max&auto=format&n=OY3WpKhZ3Sm_DsN1&q=85&s=bd162f1920c48ce1534acb29b2238d65" width="810" height="640" data-path="images/lcms/lcms.png" />

    Graph UV absorbance over time alongside intensity versus m/z to provide a full spectrum analysis of LC-MS data.
  </Card>
</CardGroup>

## Statistical Analyses

Latch Plots also provide out-of-the-box statistical methods that you typically see in GraphPad Prism.

<CardGroup cols={1}>
  <Card icon="chart-line">Linear regression</Card>
  <Card icon="tablets">IC50 dose curve fitting</Card>
  <Card icon="chart-candlestick">Outlier detection</Card>
  <Card icon="chart-column">One-way and two-way ANOVA</Card>
  <Card icon="chart-waterfall">t-test</Card>
  <Card icon="chart-scatter-3d">Correlation analysis</Card>
</CardGroup>